Table 5 List of base-resolution epi-transcriptome profiling data.
Full name | Short name | Original base | Site# (%) | Technology (or Database) | GEO Accession |
---|---|---|---|---|---|
N6-methyladenosine | m6A | A | 65,178(40.08%) | m6A-CLIP-seq | GSE71154 |
GSE86336 | |||||
miCLIP | GSE98623 | ||||
GSE63753 | |||||
Pseudouridine | ψ | U | 3137(1.93%) | ψ-seq | GSE60047 |
Pseudo-seq | GSE58200 | ||||
CeU-Seq | GSE63655 | ||||
RBS-Seq | GSE90963 | ||||
1-Methyladenosine | m1A | A | 16,380(10.07%) | miCLIP | GSE97908 |
m1A-MAP | GSE102040 | ||||
RBS-Seq | GSE90963 | ||||
m1A-seq | GSE97419 | ||||
GSE70485 | |||||
N6,2′-O-dimethyladenosine | m6Am | A | 2447(1.5%) | miCLIP | GSE122948 |
GSE78040 | |||||
GSE63753 | |||||
2′-O-methyladenosine | Am | A | 1591(0.98%) | Nm-seq | GSE90164 |
RMBase54 | – | ||||
2′-O-methylcytidine | Cm | C | 1878(1.15%) | Nm-seq | GSE90164 |
RMBase54 | – | ||||
2′-O-methylguanosine | Gm | G | 1471(0.90%) | Nm-seq | GSE90164 |
RMBase54 | – | ||||
2′-O-methyluridine | Um | U | 2253(1.39%) | Nm-seq | GSE90164 |
RMBase54 | – | ||||
5-Methylcytidine | m5C | C | 12,936(7.95%) | BS-seq | GSE122260 |
7-Methylguanosine | m7G | G | 1036(0.64%) | m7G-seq | GSE112276 |
5-Methyluridine | m5U | U | 1696(1.04%) | miCLIP & FICC-seq | GSE109183 |
Inosine | I | A | 52,618(32.36%) | RADAR53 | – |