Table 5 List of base-resolution epi-transcriptome profiling data.

From: Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications

Full name

Short name

Original base

Site# (%)

Technology (or Database)

GEO Accession

N6-methyladenosine

m6A

A

65,178(40.08%)

m6A-CLIP-seq

GSE71154

GSE86336

miCLIP

GSE98623

GSE63753

Pseudouridine

ψ

U

3137(1.93%)

ψ-seq

GSE60047

Pseudo-seq

GSE58200

CeU-Seq

GSE63655

RBS-Seq

GSE90963

1-Methyladenosine

m1A

A

16,380(10.07%)

miCLIP

GSE97908

m1A-MAP

GSE102040

RBS-Seq

GSE90963

m1A-seq

GSE97419

GSE70485

N6,2′-O-dimethyladenosine

m6Am

A

2447(1.5%)

miCLIP

GSE122948

GSE78040

GSE63753

2′-O-methyladenosine

Am

A

1591(0.98%)

Nm-seq

GSE90164

RMBase54

2′-O-methylcytidine

Cm

C

1878(1.15%)

Nm-seq

GSE90164

RMBase54

2′-O-methylguanosine

Gm

G

1471(0.90%)

Nm-seq

GSE90164

RMBase54

2′-O-methyluridine

Um

U

2253(1.39%)

Nm-seq

GSE90164

RMBase54

5-Methylcytidine

m5C

C

12,936(7.95%)

BS-seq

GSE122260

7-Methylguanosine

m7G

G

1036(0.64%)

m7G-seq

GSE112276

5-Methyluridine

m5U

U

1696(1.04%)

miCLIP & FICC-seq

GSE109183

Inosine

I

A

52,618(32.36%)

RADAR53

  1. Am, Cm, Gm, and Um are sometimes combined together as 2′-O-methylation (or Nm).