Table 1 Source genomes for the RPGG.
From: Profiling variable-number tandem repeat variation across populations using repeat-pangenome graphs
Genome | Continental population | Study | Coverage | Assembly N50 (Mb) | Fraction of VNTR annotated | Ancestry |
|---|---|---|---|---|---|---|
AK1 | EAS | KG | 54 | 0.88 | 0.840 | Korean |
HG00268 | EUR | DP | 67 | 3.51 | 0.967 | Finnish |
HG00512 | EAS | HGSVG | 28 | 8.83 | 0.995 | Han Chinese |
HG00513 | EAS | HGSVG | 30 | 1.57 | 0.993 | Han Chinese |
HG00514 | EAS | HGSVG | 31 | 1.32 | 0.948 | Han Chinese |
HG00731 | AMR | HGSVG | 31 | 2.18 | 0.995 | Puerto Rican |
HG00732 | AMR | HGSVG | 16 | 1.3 | 0.992 | Puerto Rican |
HG00733 | AMR | HGSVG | 46 | 6.88 | 0.992 | Puerto Rican |
HG01352 | AMR | DP | 68 | 5.97 | 0.992 | Colombian |
HG02059 | EAS | DP | 76 | 19.5 | 0.992 | Vietnamese |
HG02106 | AMR | DP | 57 | 0.88 | 0.640 | Peruvian |
HG02818 | AFR | DP | 56 | 0.66 | 0.802 | Gambian |
HG04217 | SAS | DP | 60 | 0.86 | 0.269 | Telugu |
NA12878 | EUR | DP | 54 | 4.67 | 0.971 | Central European |
NA19238 | AFR | HGSVG | 23 | 2.64 | 0.991 | Yoruba |
NA19239 | AFR | HGSVG | 35 | 4.87 | 0.994 | Yoruba |
NA19240 | AFR | HGSVG | 49 | 3.4 | 0.989 | Yoruba |
NA19434 | AFR | DP | 62 | 11 | 0.980 | Luhya |
NA24385 | EUR | GIAB | 54 | 1.32 | 0.981 | Ashkenazim |
