Table 1 Binding capacity, neutralizing activity, and gene family analysis of 13 monoclonal Abs isolated from Patient #5, Patient #2, and Patient #22.

From: Potent and protective IGHV3-53/3-66 public antibodies and their shared escape mutant on the spike of SARS-CoV-2

Patient

mAbs

Binding to RBD

Pseudovirus (μg/ml)

Live virus (μg/ml)

Heavy chain

Kappa chain (K) or Lambda chain (L)

Kd (nM)

Competing w/ ACE2

IC50

IC80

IC50

IC80

IGHV

HCDR3

HCDR3 length

SHM (%)

IGK(L)V

K(L)CDR3

K(L)CDR3 length

SHM (%)

P#5

P5A-1B9

3.41

+++

0.0014

0.0053

0.0043

0.0441

4-59*01

ASNGQYYDILTGQPPDYWYFDL

22

0.70

K4-1*01

QQYYSTPLT

9

0.00

P#22

P22A-1D1

5.79

+++

0.0038

0.0625

0.0198

0.1321

3-53*01

ARDRDYYGMDV

11

0.00

K1-9*01

LHLNSYRT

8

0.38

P#5

P5A-2G7

3.95

+++

0.0044

0.0287

0.1814

0.8355

4-61*01

ARERCYYGSGRAPRCVWFDP

20

0.34

L2-14*01

SSYTSSSTLVV

11

0.74

P#5

P5A-1D1

6.83

+++

0.0096

0.0691

0.0189

0.0743

3-53*01

ARDLYYYGMDV

11

0.35

K1-9*01

QQLNSYPT

8

0.76

P#5

P5A-1B8

4.28

+++

0.0115

0.0501

0.0168

0.0857

3-53*01

ARETLAFDY

9

1.40

K1-9*01

QQLNSYPPA

9

0.00

P#5

P5A-2G9

15.94

+++

0.0158

0.1466

0.0113

0.1187

3–33*01,3–33*06

ARWFHTGGYFDY

12

0.00

L5-37*01

MIWPSNALYV

10

0.35

P#5

P5A-1D2

14.02

+++

0.0186

0.1025

0.0273

0.4325

3-53*01

ARALQVGATSDYFDY

15

1.40

L1-40*01

QSCDSSLSVVV

11

1.11

P#5

P5A-3C8

1.30

+++

0.0206

0.1031

0.0112

0.1499

3-53*01

ARDLQEHGMDV

11

1.05

K1-9*01

QHLNSYPPGYT

11

1.14

P#2

P2C-1F11*

3.64

+++

0.0286

0.1195

0.0323

0.1779

3-66*01,3-66*04

ARDLVVYGMDV

11

1.75

K3-20*01

QQYGSSPT

8

0.00

P#2

P2B-2F6*

5.57

+++

0.0500

0.6074

0.4074

2.4309

4-38-2*02

ARAVVGIVVVPAAGRRAFDI

20

0.69

L2-8*01

SSYAGSNNLV

10

0.00

P#2

P2B-1A10

38.41

+++

0.0974

0.7446

0.0639

0.3053

3-53*01

AREGPKSITGTAFDI

15

0.35

K1-33*01,K1D-33*01

QQYDNLPMYT

10

0.38

P#5

P5A-3B4

1.16

+

0.0993

1.0657

0.0561

1.0080

5-51*01

ARRDSTYGGNTDY

13

0.35

L1-44*01

AAWDDSLNGVV

11

0.00

P#5

P5A-3C12

8.47

+++

0.0996

0.4679

0.2636

2.6783

2–5*02

AHSLFLTVGYSSSWSPFDY

19

0.00

K4-1*01

QQYYSTPHT

9

0.00

  1. The program IMGT/V-QUEST was applied to analyze gene germline, complementarity determining region (CDR) 3 length, and somatic hypermutation (SHM). The CDR3 length was calculated from amino acids sequences. The SHM frequency was calculated from the mutated nucleotides. Antibody binding to RBD was presented either by KD or by competing with ACE2 where “+++” indicates >80% competition and “+” 20–50%. IC50 represents the half-maximal whereas IC80 the 80% inhibitory concentrations in the pseudovirus and live SARS-CoV-2 neutralization assay.
  2. *Published in the reference (Ju, et al. 19).