Table 1 Summary of 15 assembled TCAF haplotypes constructed using large-insert BAC libraries and long-read sequencing.
Haplotype ID | BAC library (species or population) | Length (bp) | Length of TCAF SD cassettes (bp) | Copy number of TCAF SD cassettes | % GC | Haplogroup |
|---|---|---|---|---|---|---|
CHM1 | CHM1 | 368,013 | 277,806 | 2 | 39.83 | Haplogroup 2-1 |
VMRC53_hapA | NA12878 (European) | 433,048 | 277,806 | 2 | 39.56 | Haplogroup 2-2 |
VMRC53_hapB | NA12878 (European) | 425,306 | 273,483 | 2 | 39.63 | Haplogroup 3-2 |
VMRC61_hapA | HG00732 (Puerto Rican) | 337,690 | 277,856 | 2 | 39.91 | Haplogroup 2-2 |
VMRC61_hapB | HG00732 (Puerto Rican) | 435,583 | 405,366 | 3 | 39.71 | Haplogroup 4 |
VMRC62_hapA | HG00733 (Puerto Rican) | 395,405 | 277,854 | 2 | 39.60 | Haplogroup 2-2 |
VMRC64_hapA | NA19240 (Yoruba) | 323,367 | 260,853 | 2 | 39.94 | Haplogroup 2-2 |
VMRC64_hapB | NA19240 (Yoruba) | 348,654 | 277,808 | 2 | 40.07 | Haplogroup 2-2 |
VMRC66_hapA | NA19434 (Luhya) | 496,357 | 406,131 | 3 | 40.00 | Haplogroup 5 |
VMRC69_hapA | HG00514 (Han Chinese) | 387,079 | 277,712 | 2 | 39.29 | Haplogroup 3-1 |
VMRC73_hapA | GM10539 (Melanesian) | 247,628 | 145,427 | 1 | 39.93 | Haplogroup 1 |
VMRC73_hapB | GM10539 (Melanesian) | 222,558 | 145,424 | 1 | 39.85 | Haplogroup 1 |
CH251_contig | CH251 (Pan troglodytes) | 273,442 | 127,988 | 1 | 39.90 | Ancestral-like |
CH277_contig | CH277 (Gorilla gorilla) | 241,956 | 140,234 | 1 | 39.98 | Ancestral-like |
CH250_contig | CH250 (Rhesus macaque) | 225,909 | 140,184 | 1 | 40.49 | Ancestral-like |
