Fig. 2: Timepoint-specific, integrative omics networks of BR response.

a SC-ION pipeline. b Timepoint-specific networks using TF abundance (left) or TF phosphosite intensity (right). Edge color represents the time point that regulation is predicted to occur. Nodes represent individual genes. The nodes are arranged in a circular layout relative to timing—genes differentially expressed at the earliest time point (15 min) are placed at the top of the circle, and time increases as one moves clockwise through the layout.