Fig. 3: DeepSignal-plant profiles methylation status of more cytosines than bisulfite sequencing does.
From: Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning
a, b Genome browser view53 of the reads coverage and methylation status of a 56 kb region (chr5:14323000–14379500:+) of A. thaliana (a) and a 15 kb region (chr7:3089990–3104990:+) of O. sativa (sample1) (b). The blue shaded areas show the gaps which cannot be mapped by bisulfite sequencing. c, d Circos plot54 of the number of cytosines detected by Nanopore sequencing only in the genomes of A. thaliana (c) and O. sativa (sample1) (d). Cycles from inner to outer: CpG (blue), CHG (green), CHH (red), reference (the chromosomes are binned into 200,000-bp (base pair) windows. The centromeric region is indicated by the red bar in each chromosome). Source data are provided as a Source Data file.
