Table 1 The statistics of assemblies and annotations of three Papaver genomes.
P. setigerum | P. rhoeas | P. somniferum | |
|---|---|---|---|
Contig | |||
Total number of contigs | 553 | 3,273 | 61,801 |
Assembly size (MB) | 4590.03 | 2541.84 | 2709.32 |
Contig N50 (MB) | 65.57 | 5.29 | 1.74 |
Contig N90 (MB) | 13.37 | 0.61 | 0.12 |
Largest contig (MB) | 178.78 | 39.02 | 13.77 |
Scaffold | |||
Total number of scaffolds | 381 | 237 | 55,380 |
Assembly size (MB) | 4590.12 | 2542.27 | 2712.53 |
Scaffold N50 (MB) | 211.16 | 329.41 | 249.6 |
Scaffold N90 (MB) | 155.08 | 33.61 | 172.47 |
Largest scaffold (MB) | 329.11 | 361.76 | 328.07 |
BUSCO for genome | 94.50% | 92.80% | 95.30% |
GC content | 36.88% | 37.94% | 37.28% |
Number of gaps | 172 | 3,036 | 6,421 |
Annotation | |||
Number of protein-coding genes | 106,517 | 41,470 | 55,316 |
Supported by RNA-seq or homologs | 100% | 100% | 100% |
Supported by protein family | 70.56% | 70.14% | 70.05% |
Repeat density | 71.55% | 73.92% | 76.68% |
Number of ncRNA | 23,109 | 12,429 | 12,636 |
