Fig. 3: Phospholipid biosynthesis and other top-ranking differential pathways.

a Top-ranking differential pathways. Graph illustrates –log10(p-values) and false discovery rates (FDRs), with bars colored by FDR, from Limma Roast’s Mixed statistic87 (which is one-sided) adjusted with FDRs. b Phospholipid biosynthesis network. Nodes are colored by between-group z-score, whereas unmeasured nodes are colored dark gray. Orientation of triangle also indicates the directionality of regulation. Connections are from the Pathway Commons network. Source data are provided as a Source Data file.