Fig. 3: Lateral seam dynamics of the BAM from MD simulations.
From: Plasticity within the barrel domain of BamA mediates a hybrid-barrel mechanism by BAM
a Snapshots showing notable conformational state transitions observed in MD simulations. b Moving average of the hydrogen bonds between the backbones of BamA lateral seam strands. Plots are from three independent 6-μs simulations demonstrating a range of possible dynamics. c Snapshot of the BamA β-barrel from the second replica of BAMΔΒ(out) highlighting a single backbone hydrogen bond formed between residues Y432 and I806.
