Table 3 Aggregated statistics of sequencing datasets and metagenome-assembled genomes (MAGs) generated in this study.
From: Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults
Attribute | n | Â | Â |
|---|---|---|---|
Total stool samples sequenced | 401 | Â | Â |
Total sequencing datasets | 405 | Â | Â |
Short-read (SR) | 312 | Â | Â |
Linked-read (LR) | 93 | Â | Â |
Sequenced with SR and LR | 4 | Â | Â |
Samples sequenced per patient | Median | Range | SD |
|  | 2 | 1–13 | 2.4 |
Reads after processing (M) | Median | Range | SD |
SR | 7.6 | 0.01–28.8 | 4.4 |
LR | 104 | 0.9–323.6 | 40 |
Assembly N50 (kb) | Median | Range | SD |
SR | 17.2 | 0.7–163.6 | 24.8 |
LR | 147.6 | 9.5–956.3 | 168.5 |
Binned genomes | n | % | Â |
SR | 2859 | Â | Â |
High quality | 103 | 4 | Â |
Medium quality | 2124 | 74 | Â |
Low quality | 632 | 22 | Â |
LR | 1900 | Â | Â |
High quality | 518 | 27 | Â |
Medium quality | 950 | 50 | Â |
Low quality | 432 | 23 | Â |
