Fig. 4: A NINJA NJ GrapeTree showing the population structure of the Shigella S3 cluster (HC2000_192). | Nature Communications

Fig. 4: A NINJA NJ GrapeTree showing the population structure of the Shigella S3 cluster (HC2000_192).

From: Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing

Fig. 4

This subtree is based on the tree shown in Fig. 1. a The tree nodes are colour-coded by HC1100 data. The S. flexneri phylogenetic groups (PG) identified by Connor and coworkers2 are indicated. Some HC400 clusters are indicated to separate PG3 from PG1. S. boydi 22 (formerly prov. E1621-54) is shown. b The tree nodes are colour-coded by S. flexneri serotype. The scale bar indicates the number of cgMLST allelic differences.

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