Fig. 3: Distribution of antimicrobial resistance phenotypes, antimicrobial resistance genes and plasmid replicons. | Nature Communications

Fig. 3: Distribution of antimicrobial resistance phenotypes, antimicrobial resistance genes and plasmid replicons.

From: Antimicrobial resistance and population genomics of multidrug-resistant Escherichia coli in pig farms in mainland China

Fig. 3

The phylogenetic tree was generated based on the concatenated multilocus sequence typing (MLST) alleles using fastMLST v0.0.15, followed by multiple sequence alignment using MAFFT v7.407 and phylogenetic inference using FastTree. The tree was visualized using the Interactive Tree Of Life (iTOL v.5). Raw data for the MLST-based tree and its annotation codes are provided in Supplementary Data 11.

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