Fig. 5: Intra-host variant detection on Ebola virus and norovirus datasets. | Nature Communications

Fig. 5: Intra-host variant detection on Ebola virus and norovirus datasets.

From: Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data

Fig. 5

A Variant calls before and after filtering by Variabel for the Ebola virus dataset. The x-axis shows the positions of the variant calls on the reference genome, and the y-axis shows the minimum allele frequency the same variant calls among the samples. Variant calls before the filtering are marked in blue and the variant calls after applying Variabel are marked in red. The size of the dot shows the number of samples in which the variant is detected. B Variant calls before and after filtering by Variabel for the norovirus dataset. The x-axis shows the positions of the variant calls on the reference genome, and the y-axis shows the minimum allele frequency the same variant calls among the samples. Variant calls before the filtering are marked in blue and the variant calls after applying Variabel are marked in red. The size of the dot shows the number of samples in which the variant is detected. For both A and B, source data are provided as a Source Data file.

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