Fig. 1: DockQ scores for the test set (n = 1481 for all but RF, n = 1455).
From: Improved prediction of protein-protein interactions using AlphaFold2
Distribution of DockQ scores as boxplots for different modelling strategies on the test set. Boxes encompass data quartiles, horizontal lines mark the medians and upper and lower whiskers indicate respectively maximum and minimum values for each distribution. All AF2 models have been run with the same neural network configuration (m1-10-1). Outlier points are not displayed here. AF2, refers to running AF2 using the default AF2 MSAs, “Paired” refers to using MSAs paired using information about species and “Block” refers to using block diagonalization MSAs.
