Table 1 Assembly and annotation statistics.
From: Chromosome evolution and the genetic basis of agronomically important traits in greater yam
Assembly statistic | Value |
|---|---|
Scaffold sequence total/count | 480.0 Mb/25 |
Scaffold N50 length/count | 24.0 Mb/9 |
Scaffold N90 length/count | 19.5 Mb/18 |
Contig sequence total/count | 479.5 Mb/532 |
Contig N50 length/count | 4.5 Mb/31 |
Contig N90 length/count | 565.0 kb/126 |
Annotation statistic | Value |
|---|---|
Primary transcriptsa (loci) | 25,189 |
Alternate transcriptsb | 13,414 |
Total transcripts | 3860 |
Primary transcripts | |
Average number of exons | 5.5 |
Median exon length (bp) | 156 |
Median intron length (bp) | 151 |
Number of complete genes | 24,614 |
Number of incomplete genes with start codon | 218 |
Number of incomplete genes with stop codon | 281 |
Gene model support | |
Number of genes with Pfam annotation | 19,599 |
Number of genes with Panther annotation | 23,183 |
Number of genes with KOG annotation | 10,939 |
Number of genes with KEGG Orthology annotation | 6849 |
Number of genes with E.C. number annotation | 7654 |
