Fig. 3: Pathway search comparison to dataset of pathways extracted from MetaCyc.
From: Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASx
a Coverage of the collected MetaCyc pathways dataset (1131 pathways) with MetaCyc reactions in ATLAS and all ATLASx network. b Rank of the MetaCyc pathway according to the NICEpath pathway search algorithm. c For the MetaCyc pathway PWY-361 (phenylpropanoid biosynthesis) ATLASx found over 10,000 alternatives with better overall atom conservation. d Example of an alternative pathway for the original MetaCy pathway PWY-361. The LCSB IDs of the ATLASx compounds are given within parentheses.
