Table 1 The 5 different antibiotic resistance databases used in this study: only ATLAS stores patient metadata which means that it can be compared with other databases in terms of their derived datatypes, but the converse is not possible.
From: Seeking patterns of antibiotic resistance in ATLAS, an open, raw MIC database with patient metadata
database | datatype | patient metadata (pathogen, antibiotic and ...) |
|---|---|---|
ATLAS | raw patient MICs | multiple MICs per patient/year/location/infection site |
- TEST | a subset of ATLAS | multiple MICs per patient/year/location/infection site |
covering years 2004-2017 | ||
- INFORM | a subset of ATLAS | multiple MICs per patient/year/location/infection site |
covering years 2012-2017 | ||
- AWARE | a subset of ATLAS | multiple MICs per patient/year/location/infection site |
data not analysed herein | covering years 2008-2017 | |
EUCAST | aggregated MIC histograms | no patient metadata; drug & pathogen are specified |
ESPAUR | frequency of resistance | no patient metadata; drug & pathogen are specified |
Resistance Map | frequency of resistance | no patient metadata; drug & pathogen are specified |
ECDC | frequency of resistance | no patient metadata; drug & pathogen are specified |
