Fig. 4: Major, minor, and mixed haplotypes in the 657 nucleotide S (spike) gene cloned sequences. | Nature Communications

Fig. 4: Major, minor, and mixed haplotypes in the 657 nucleotide S (spike) gene cloned sequences.

From: Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City

Fig. 4

Each row represents a sequenced clone (n = 93). Colored markings denote mutations from the reference genome. Major strain mutations are those found in the Alpha variant. Minor strain mutations are those found in Epsilon variant. Other mutations are found at intermediate or low frequencies.

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