Fig. 3: Subgenome evolution and characterisation.
From: The genomic basis of the plant island syndrome in Darwin’s giant daisies
A Ideogram with gene and transposable element distribution in 25-kbp bins. Gene density is plotted in chromosome representations and transposable element distribution is plotted to the side of each chromosome in black. Chromosomes are arranged in homoelogous pairs. B The number of isoforms detected for each subgenome. Each data point corresponds to a chromosome in a subgenome (subgenome A in blue and B in orange; 17 pairwise comparisons; subgenome A: min = 5176; max = 8817, avg = 7175; Subgenome B: min = 4277; max = 7982, avg = 6103). Chromosome pairs are linked by grey lines. C Number of genes detected for each subgenome (17 pairwise comparisons; subgenome A: min = 1571; max = 1571, avg = 1327; Subgenome B: min = 944; max = 1474, avg = 1181). D The number of pseudogenes detected for each subgenome (17 pairwise comparisons; Subgenome A: min = 196; max = 315, avg = 270; subgenome B: min = 186; max = 312, avg = 230). E Length of transposable elements detected for each subgenome (17 pairwise comparisons; subgenome A: min = 59,440,194; max = 97,142,619, avg = 78,545,717; Subgenome B: min = 57,631,669; max = 91,646,014, avg = 76,870,839).
