Fig. 5: Metabolic reconstruction of core pathways for nitrogen-fixing MAGs.
From: Phylogenetically and catabolically diverse diazotrophs reside in deep-sea cold seep sediments
a Anaerobic archaeal oxidation of methane; b dissimilatory sulfate reduction; c archaeal methanogenesis; d anaerobic degradation of alkanes by bacteria. Red font indicates that not all MAGs retrieved include the gene (numbers of MAGs with the corresponding gene indicated in parentheses). The percentages between brackets indicate the estimated completeness of the corresponding MAGs. Mtr N5-methyltetrahydromethanopterin–coenzyme M–methyltransferase, Mer 5,10-methylenetetrahydromethanopterin reductase, Mtd methylenetetrahydromethanopterin dehydrogenase, Mch methenyltetrahydromethanopterin cyclohydrolase, Ftr formylmethanofuran-tetrahydromethanopterin N-formyltransferase, Fwd formylmethanofuran dehydrogenase, Hdr heterodisulfide reductase, APS adenosine phosphosulfate, Apr adenylylsulfate reductase; Sat sulfate adenylyltransferase, GS glutamine synthetase, GOGAT glutamate synthase, GDH NADH-glutamate dehydrogenase, Ass alkylsuccinate synthase, AssK CoA-ligase, Mcm methylmalonyl-CoA mutase, Pcc propionyl-CoA carboxylase, Acd acetate-CoA ligase (ADP-forming). Detailed enzyme annotation is presented in Supplementary Data 7.
