Fig. 2: Phylogeographic analysis of SARS-CoV-2 in Jordan. | Nature Communications

Fig. 2: Phylogeographic analysis of SARS-CoV-2 in Jordan.

From: Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions

Fig. 2

A A representative time-calibrated phylogeny. Branches are colored by region-level geographic state reconstruction. Internal nodes annotated with black point represent posterior support >0.75. B The estimated number of introductions or Markov jumps into Jordan from source regions summarized across three replicates for the three downsampling strategies annotated in color. EII: Epidemiological incidence informed; RE: Regional enrichment; III: Introduction Intensity Index informed—see Methods for full definition. C Posterior median number of introductions into Jordan binned by month from each region, summarized across all datasets. D Lineage frequency profile over time for 579 sequences generated in this study, classified by the Pangolin nomenclature. Only major lineages in Jordan and variants of concern are listed in the legend. Dashed line indicates when variant screening was implemented.

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