Table 1 List of the inhibitors used and rationale for their usage, signaling cascade relevance, used concentration (conc.), and 50% inhibitory concentration (IC50)
Inhibitor | Type of inhibitor | Conc. | IC50 | Mechanism and relevance to possible PLY membrane effects | |
---|---|---|---|---|---|
1 | Dynasore | Dynamin inhibitor | 10 µM | 15 µM | Dynamin-dependent clathrin-mediated endocytosis, but also implicated in phagocytosis, flotillin-, caveolin-dependent ones. |
2 | MiTMAB | Dynamin inhibitor II | 10 µM | 3.1 µM | Dynamin-dependent clathrin-mediated endocytosis, but also implicated in phagocytosis, flotillin-, caveolin-dependent ones. |
3 | Dyngo®4a | Dynamin inhibitor | 10 µM | 5.5 µM | Dynamin-dependent clathrin-mediated endocytosis, but also implicated in phagocytosis, flotillin-, caveolin-dependent ones. |
4 | Amiloride | Na+/K+ exchange inhibitor | 2 mM | 2–30 µM | Macropinocytosis blocker, inhibiting the Na+/K+ exchanger, but also antagonizing the formation of submembranous acidification zones82. |
5 | NSC23766 | Rac1 GTPase inhibitor | 100 μM | 50 µM | Rac1 activity is modulated by PLY. Rac1 regulates some forms of membrane clathrin-independent endocytosis83. |
6 | C3 transferase | RhoA GTPase inhibitor | 0.1 μg/ml | 1 ng/ml | RhoA activity is modulated by PLY. RhoA can alter transferrin-mediated endocytosis84. |
7 | Ouabain | Na+/K+-ATPase & submembranous acidification blocker | 10 µM | 1 µM | Pore formation by PLY may cause cell swelling, leading to secondary activation of the Na+/K+-ATPase and to the boost of various endocytotic mechanisms85. |
8 | Go6983 | PKC inhibitor | 1 µM | 7–60 nM | Protein kinase C plays a role in some PLY effects and can boost clathrin-dependent endocytosis86. |
9 | GSK690693 | Akt/PKCε inhibitor | 10 µM | 10–20 nM | Activated Akt87 and PKCε88 play a role in several forms of endocytosis. |
10 | PP2 | Src-kinase inhibitor | 10 µM | 4–5 nM | PLY activates Src-kinases. The activated Src-kinases Fyn and Syk can stimulate endocytosis and alter cellular volume control89. |
11 | Wortmannin | PI3 kinase inhibitor | 10 µM | 2–4 nM | Membrane-associated PIP/PIP2/PIP3 signaling. Blocks the phosphorylation of PIP2 to PIP3. The latter participates in small GTPase and Akt membrane recruitment, which can alter secondarily clathrin-independent and dynamin-dependent endocytosis pathways63. |
12 | U73122 | PLC inhibitor | 10 µM | 1–5 µM | Membrane-associated PIP/PIP2/PIP3 signaling. Blocks membrane-associated PIP2 splitting into IP3 and DAG, which can activate downstream PKC and alter endocytosis63. |
13 | bpV(pic) | PTEN inhibitor | 2 µM | 31 nM | Membrane-associated PIP/PIP2/PIP3 signaling. Blocks the transition of PIP3 to PIP2 and shifts the balance of PIP2-PIP3, which affects multiple endocytosis pathways63. |
14 | Ca2+-depletion | Ion | 0 | Block of Ca-dependent endocytosis by some small pore-forming toxins90. | |
15 | K+-depletion | Ion | 0 | Membrane hyperpolarization, clathrin-coated pit reduction91. |