Table 1 Overview of lead SNPs with significant associations at 29 independent loci in UL GWAS meta-analysis
Locus | Lead SNP | RA | OA | RAFEUR | PMeta | OR (95% CI) | Gene(s) of interesta |
---|---|---|---|---|---|---|---|
1p36.12b,c | rs7412010 | C | G | 0.15 | 2.4 × 10−29 | 1.13 (1.11–1.16) | WNT4, CDC42 |
2p23.2 | rs55819434 | A | G | 0.91 | 5.6 × 10−09 | 0.92 (0.90–0.95) | BABAM2 |
2p25.1b,c | rs35417544 | T | C | 0.69 | 2.3 × 10−19 | 1.09 (1.07–1.10) | GREB1 |
3q26.2c | rs35446936 | A | G | 0.24 | 1.0 × 10−08 | 0.95 (0.93–0.96) | TERC |
4q12c | rs62323682 | T | C | 0.94 | 4.9 × 10−18 | 0.87 (0.84–0.90) | LNX1, PDGFRA |
4q13.3c | rs12640488 | A | G | 0.52 | 4.0 × 10−14 | 0.94 (0.92–0.96) | SULT1B1 |
4q22.3 | rs4699299 | T | C | 0.69 | 4.7 × 10−08 | 0.95 (0.94–0.97) | PDLIM5 |
5p15.33c | rs72709458 | T | C | 0.23 | 4.7 × 10−21 | 1.10 (1.08–1.13) | TERT |
5q35.2c | rs2456181 | C | G | 0.49 | 1.1 × 10−11 | 0.94 (0.93–0.96) | ZNF346, UIMC1 |
6p21.31 | rs116251328 | A | T | 0.02 | 3.0 × 10−08 | 1.15 (1.09–1.21) | GRM4, HMGA1 |
6q25.2b,c | rs58415480 | C | G | 0.84 | 1.9 × 10−54 | 0.84 (0.82–0.86) | SYNE1, ESR1 |
7q31.2 | rs2270206 | A | C | 0.16 | 4.6 × 10−08 | 1.06 (1.04–1.09) | WNT2 |
9p24.3c | rs10976689 | A | G | 0.60 | 2.4 × 10−13 | 0.94 (0.93–0.96) | ANKRD15 |
10q24.3c | rs9419958 | T | C | 0.13 | 1.1 × 10−16 | 1.10 (1.08–1.13) | OBFC1, SLK |
10p11.22 | rs10508765 | A | G | 0.80 | 1.5 × 10−10 | 1.07 (1.05–1.09) | ZEB1, ARHGAP12 |
11p15.5c | rs547025 | T | C | 0.92 | 1.5 × 10−14 | 1.13 (1.09–1.16) | RIC8A, BET1L |
11p14.1b | rs11031006 | A | G | 0.14 | 5.7 × 10−15 | 0.91 (0.89–0.93) | FSHB |
11p13c | rs61889186 | C | G | 0.86 | 1.4 × 10−25 | 0.89 (0.87–0.91) | WT1 |
11p13c | rs2785202 | C | G | 0.55 | 6.9 × 10−14 | 1.06 (1.05–1.08) | PDHX, CD44 |
11q22.3c | rs149934734 | T | C | 0.03 | 1.1 × 10−27 | 1.33 (1.26–1.40) | C11orf65, KDELC2 |
12q13.11c | rs2131371 | A | C | 0.28 | 1.6 × 10−18 | 0.93 (0.91–0.94) | SLC38A2 |
12q15 | rs11178393 | T | C | 0.89 | 3.3 × 10−08 | 1.08 (1.05–1.10) | PTPRR |
12q24.31 | rs28583837 | A | G | 0.22 | 2.3 × 10−08 | 0.94 (0.92–0.96) | PITPNM2 |
13q14.11c | rs117245733 | A | G | 0.02 | 5.7 × 10−14 | 1.31 (1.21–1.39) | FOXO1 |
17p13.1c | rs78378222 | T | G | 0.99 | 7.1 × 10−31 | 0.65 (0.60–0.70) | SHBG, TP53 |
20p12.3c | rs16991615 | A | G | 0.07 | 8.8 × 10−10 | 1.11 (1.07–1.14) | MCM8, TRMT6 |
22q13.1c | rs4821939 | A | T | 0.20 | 7.8 × 10−16 | 1.08 (1.06–1.10) | TNRC6B |
Xp26.2c | rs12392108 | A | T | 0.31 | 5.9 × 10−46 | 1.13 (1.11–1.15) | RAP2C |
Xq13.1c | rs4360450 | A | G | 0.37 | 2.1 × 10−18 | 1.08 (1.06–1.10) | MED12 |