Fig. 3: Features of HPV18-integrated local haplotype.
From: Human papillomavirus integration perspective in small cell cervical carcinoma
a Human genomic segments related to HPV18-integrated local haplotypes are shown as sectors with their relevant haplotype path in sample-specific colors. Regions of local haplotypes are noted by circled numbers in sequence, where some are degenerated by symbols for simplification. Repeat times of contigs in local haplotypes are stated in the figure legend. Features of HPV18-integrated sites are depicted as single-letter icons. DNA copy number (CN) and RNA-seq transcription abundance are displayed in gradient color (red for CN, green for RNA-seq depth; light blue for regions outside of the local haplotypes), with bilateral notes in relevant sample color. b Statistics counts of features of HPV18-integrated sites. The “V” in circle center means HPV18 genome, and outer band in light blue means the human genome.
