Fig. 1: LB and LRFR induce distinct transcriptional changes in elongating hypocotyls. | Nature Communications

Fig. 1: LB and LRFR induce distinct transcriptional changes in elongating hypocotyls.

From: A combination of plasma membrane sterol biosynthesis and autophagy is required for shade-induced hypocotyl elongation

Fig. 1

a Hypocotyl elongation of the indicated genotypes. The horizontal bar represents the median; boxes extend from the 25th to the 75th percentile, whiskers extend to show the data range. Different letters indicate significant differences (P < 0.05, two-way ANOVA with Tukey’s HSD test; the exact P values are available in the Source Data). Sample size (n) that is given on top indicates biologically independent seedlings examined over one experiment. The experiment was repeated two times with similar results. b Schematic summary of the experimental setup used for transcriptome analysis. c Number of up- and downregulated genes in Col-0 hypocotyls in the indicated light conditions (FDR < 0.05, T test with BH correction). d GO term enrichment analysis in Col-0 hypocotyl upregulated gene lists. Each node indicates a significantly enriched GO term (FDR < 0.05). Two terms (nodes) are connected if they share 20% or more genes. The line thickness increases with the increasing number of shared genes between two terms. Only selected GO terms (black outlines) are annotated. The full list of enriched GO terms is in Supplementary Data 2, the interactive version of (d) is available at https://figshare.com/s/864fba30bbd3919d0745. See also Supplementary Fig. 1.

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