Fig. 3: PIFs & YUCs are required for basal expression of many growth- and hormone-associated genes in hypocotyls of WL-grown seedlings. | Nature Communications

Fig. 3: PIFs & YUCs are required for basal expression of many growth- and hormone-associated genes in hypocotyls of WL-grown seedlings.

From: A combination of plasma membrane sterol biosynthesis and autophagy is required for shade-induced hypocotyl elongation

Fig. 3

a The distribution of LB-induced genes in hypocotyls according to the dependence on PIFs and YUCs using the comparison of Col-0, pif457, and yuc2589 transcriptomes (FDR < 0.05, F test with post hoc test). b Distributions of Z-scores computed from replicate averages for categories shown in (a). c Number of misregulated genes in pif457 and yuc2589 hypocotyls compared to Col-0 in WL (FDR < 0.05, T test with BH correction). d Distributions of Z-scores computed from replicates averages for genes that are grouped as in (c). e Comparison of PIF-dependent genes in hypocotyls with putative PIF4 targets (as listed in ref. 26), promoters (1 kb upstream) containing G-box (CACGTG) or PBE-box (CATGTG). Asterisks (*) indicate the statistically significant overrepresentation compared to expected (P < 0.05, Binomial distribution, one-tailed; the exact P values are available in the Source Data). b, d The horizontal bar represents the median; boxes extend from the 25th to the 75th percentile, whiskers extend to show the data range. Numbers indicate significantly regulated genes in the given categories and/or GO terms. The full list of misregulated genes, enriched GO terms, and enriched motifs are given in Supplementary Data 4, 5, and 6. See also Supplementary Fig. 3.

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