Table 1 Major effect loci for microbial taxa and short-chain fatty acids
From: Genetic analysis of seed traits in Sorghum bicolor that affect the human gut microbiome
Microbial taxa and short-chain fatty acid | LOD score | Chromosome | Peak position (Mb) | Confidence interval (Mb) |
|---|---|---|---|---|
Ruminococcaceae_Ruminococcaceae UCG.002 | 3.43 | 2 | 7.93 | 7.01–12.79 |
Peptostreptococcaceae_Paeniclostridium | 3.22 | 2 | 9.69 | 4.83–77.22 |
Christensenellaceae_ChristensenellaceaeR.7group | 4.17 | 2 | 9.69 | 7.93–9.69 |
Prevotellaceae_Paraprevotella | 4.05 | 2 | 65.54 | 63.91–69.84 |
Butyrate | 4.84 | 2 | 65.69 | 65.54–67.24 |
Valerate | 3.73 | 2 | 65.69 | 65.54–67.24 |
Lachnospiraceae_Dorea | 3.61 | 3 | 4.04 | 3.81–7.46 |
Lachnospiraceae_Coprococcus 3 | 3.88 | 3 | 4.04 | 3.81–72.46 |
Lachnospiraceae_Roseburia | 3.52 | 3 | 71.51 | 4.04–73.24 |
Christensenellaceae_ChristensenellaceaeR.7group | 3.63 | 3 | 71.51 | 71.51–72.69 |
Peptostreptococcaceae_Paeniclostridium | 8.64 | 4 | 59.46 | 58.94–60.16 |
Prevotellaceae_Paraprevotella | 4.01 | 4 | 61.16 | 60.49–61.88 |
Christensenellaceae_ChristensenellaceaeR.7group | 7.37 | 4 | 61.3 | 60.84–61.88 |
Ruminococcaceae_Ruminococcaceae UCG.002 | 4.74 | 4 | 61.56 | 60.84–62.37 |
Lachnospiraceae_Coprococcus1 | 4.09 | 4 | 61.88 | 61.16–62.4 |
Lachnospiraceae_Roseburia | 5.41 | 4 | 61.88 | 48.57–62.4 |
Ruminococcaceae_Faecalibacterium | 7.02 | 4 | 61.88 | 61.16–62.4 |
Erysipelotrichaceae_Catenibacterium | 5.26 | 4 | 61.88 | 59.46–62.37 |
Valerate | 3.51 | 5 | 13 | 7.45–49.41 |
Lachnospiraceae_Coprococcus 3 | 3.04 | 5 | 47.69 | 7.45–54.78 |
Lachnospiraceae_Blautia | 3.07 | 5 | 47.69 | 13–55.7 |
Lachnospiraceae_Dorea | 3.19 | 5 | 47.69 | 13–55.7 |
Butyrate | 3.08 | 5 | 47.69 | 13–55.7 |
Propionate | 3.35 | 5 | 54.78 | 52.23–55.7 |
