Table 1 Predicted gene expression in blood-COVID-19 associations for likely causal genes based on COVID-19 Host Genetics Initiative data

From: SUMMIT: An integrative approach for better transcriptomic data imputation improves causal gene identification

Chromosome

Gene

R2

COVID-B2

COVID-A2

   

Direction

p

Direction

p

3

ACTL6A

0.008

− 

9.9 × 10−19

− 

2.5 × 10−1

3

LRRC2

0.044

− 

5.4 × 10−9

− 

3.9 × 10−5

3

RP11-24F11.2

0.006

− 

8.8 × 10−12

− 

9.0 × 10−6

3

FLT1P1

0.116

− 

3.3 × 10−14

− 

1.0 × 10−7

3

CCR5

0.049

− 

9.9 × 10−19

− 

1.8 × 10−6

12

OAS1

0.056

− 

1.4 × 10−7

− 

1.2 × 10−8

12

OAS3

0.041

+ 

2.7 × 10−8

+ 

3.4 × 10−11

17

LRRC37A4P

0.668

+ 

2.6 × 10−6

+ 

3.5 × 10−3

17

RP11-707O23.5

0.599

− 

2.8 × 10−6

− 

3.4 × 10−3

17

DND1P1

0.489

− 

2.7 × 10−6

− 

3.3 × 10−3

21

IFNAR2

0.037

− 

2.2 × 10−11

− 

2.2 × 10−9

  1. “ + ” and “ − ” represent positive and negative directions, respectively. p-values were calculated by the SUMMIT (two-sided)