Fig. 1: Genome-wide binding of wheat transcription factors.
From: Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat
a Evolution of domesticated wheats (modified from ref. 8). b Schematic of the experimental design and filtering steps. c Tree map illustrating the fraction of transcription factor (TF) families defined as high-confidence (HC; canonical motif de novo identified from the TF peak list), median-confidence (MC; canonical motif enriched in the TF peak list), and low-confidence (LC; canonical motif not enriched in the TF peak list) families. d Clustering of TF binding correlations according to the occurrence of DAP-seq peaks. The genome is divided into consecutive 2 kb bins. For each TF, bins are binarized, indicating the presence or absence of TFBSs, which are used to calculate the Pearson correlation coefficient. The heatmap of the clustering of AP2, NAC, and GARP family TF binding correlations is enlarged on the right. Dashed boxes represent the homologous TFs in the heatmap, encompassing three sets of homoeologous genes. The homoeologous relationships of 189 TFs are listed in Supplementary Data 3. Source data are provided as a Source Data file.
