Fig. 3: The photochemical process. | Nature Communications

Fig. 3: The photochemical process.

From: Protein control of photochemistry and transient intermediates in phytochromes

Fig. 3

a Sketch of the S1 and S0 PES along the reaction coordinate(s) with the quantum yield due to Set A. We represented the structures of the chromophore at the beginning of the simulation, at the time of the S1 → S0 transition, and at the end of the simulation. The main hydrogen bonds involving the D-ring are highlighted. b Correlation between the dihedral angles D5 and D6. All reactive trajectories from Set A are shown using blue lines for trajectories running on S1, and red lines for those on S0. The density distribution is shown at the starting conditions, at the S1 → S0 hop, and at the end of the simulation. c Time evolution of the electronic state populations evaluated as the fraction of trajectories running on the given state at the given time for both Set A and Set B, which are the mean values, with their 95% confidence intervals. Black line: fit of the S1 population according to an exponential function (Supplementary Methods 3). d Representative reactive and non-reactive SH trajectories from Set A and Set B. Green stars represent the S1-to-S0 transition. Source data are available in the Zenodo repository89.

Back to article page