Table 2 RT-PCR primers

From: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma

Gene

Forward Sequence

Reverse Sequence

Msi1

5′ - TGT CTG TGA ACA CCA CGG TG − 3′

5′ - CGT GAC AAA TCC AAA CCC TCT − 3′

MSI1

5′ - CAC CAA TGG GTA CCA CTG AA − 3′

5′ - ACT CGT GGT CCT CAG TCA GC − 3′

MYC

5′ - AAT GAA AAG GCC CCC AAG GTA GTT ATC C − 3′

5′ - GTC GTT TCC GCA ACA AGT CCT CTT C − 3′

GAPDH

5′ - TGA ACC ACC AAC TGC TTA GC − 3′

5′ - GGC ATG GAC TGT GGT CAT GAG − 3′

β-actin

5′ - CCG AGC GTG GCT ACA GCT TC − 3′

5′ - ACC TGG CCG TCA GGC AGC TC − 3′

β-ACTIN

5′ - TAT CCC TGT ACG CCT CT − 3′

5′ - AGG TCT TTG CGG ATG T − 3′

HIPK1 gRNA

5′ - TCC CTT TTC ACT CCA AAT AGT TGT − 3′

5′ - ATG GTG AGC ACT ACC CTC CA − 3′