Fig. 6: Substantial tandem duplication of the fom1 locus on Chr 09. | Nature Communications

Fig. 6: Substantial tandem duplication of the fom1 locus on Chr 09.

From: Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon

Fig. 6

a Association profiles across various genotyping/imputation methods described in main text. Estimated effects are depicted on y-axis and darkness of dot indicates p value (see “Methods”). Blue box highlights the known fom1 NBS-LRR while green box defines paralog position identified from this study. b Dotplot between AY and MR1 (origin at top left) shows substantial duplication of large NBS-LRR contatining region. Colored boxes are consistent across a and b. c Amino-acid alignment of DHL92 annotated NBS-LRR, AY Fom1 translation, and both paralogs of Fom1 translation from MR1. The LRR region is highlighted in yellow and the NBS domain is unshaded. The N-terminal TIR domain is not shown due to space constraints. Variation in winImp calls, relative to FSFHap, results from less aggressive calling algorithm. Source data are provided as a Source Data file.

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