Table 2 Antimicrobial resistance phenotypes of 11 Escherichia albertii isolates with varied antimicrobial resistance genotypes
From: The genomic epidemiology of Escherichia albertii infecting humans and birds in Great Britain
Sequence Read Archive Accession | Genotypea | Minimum inhibitory concentration (μg/mL)c | |||||||
---|---|---|---|---|---|---|---|---|---|
Cephalosporin | Fosfomycin | Tetracycline | β-lactam | Fluoroquinolone | Chloramphenicol | Rifampicin | |||
Cefoxitin | Ceftriaxone | Fosfomycin | Tetracycline | Ampicillin | Ciprofloxacin | Chloramphenicol | Rifampicin | ||
SRR12769799 | uhpT_E350Q*, marR_S3N*, parE_I355T* | 8 | 0.047 | 1 | 1.5 | 3 | 0.016 | 6 | 8 |
SRR12769953 | uhpT_E350Q*, marR_S3N*, parE_I355T* | 6 | 0.047 | 6 | 0.5 | 4 | 0.008 | 3 | 2 |
SRR13049225 | uhpT_E350Q*, marR_S3N*, parE_I355T* | 6 | 0.047 | 2 | 1 | 4 | 0.006 | 4 | 4 |
SRR13049237 | uhpT_E350Q*, parE_I355T* | 6 | 0.047 | 1 | 1 | 4 | 0.012 | 6 | 3 |
SRR11442290 | uhpT_E350Q*, marR_S3N*, parE_I355T*, gyrA_S83L* | 4 | 0.047 | 1.5 | 0.75 | 6 | 0.125 | 3 | 12 |
SRR15338008 | uhpT_E350Q*, marR_S3N*, gyrA_S83L*, parE_I355T* | 1.5 | <0.016 | 1.5 | 0.38 | 3 | 0.032 | 2 | 4 |
SRR8981835 | uhpT_E350Q*, marR_S3N*, gyrA_S83L*, parE_I355T* | 1.5 | <0.016 | 1.5 | 0.25 | 3 | 0.032 | 2 | 4 |
SRR15338057 | blaDHA-1, uhpA_G97D*, uhpT_E350Q*, tet(A), marR_S3N*, blaTEM-1, gyrA_S83L*, parE_I355T*, qnrB4 | 6 | 0.064 | 12 | 48 | >256 | 0.38 | 1.5 | 4 |
SRR9050433 | blaDHA-1, uhpA_G97D*, uhpT_E350Q*, tet(A), marR_S3N*, blaTEM-1, gyrA_S83L*, parE_I355T*, qnrB4 | 1 | 0.047 | 8 | 48 | 96 | 0.5 | 3 | 16 |
SRR11425059 | uhpT_E350Q*, tet(A), marR_S3N*, blaTEM-1, gyrA_S83L*, parE_I355T* | 12 | 0.064 | 2 | 48 | >256 | 0.19 | 4 | 8 |
SRR3574322 | uhpT_E350Q*, tet(A), marR_S3N*, blaTEM-1, gyrA_S83L*, parE_I355T* | 3 | <0.016 | 1 | 32 | 96 | 0.023 | 4 | 4 |
Genotype associated with resistanceb | blaDHA-1 | uhpA_G97D*, uhpT_E350Q* | tet(A), tet(B), marR_S3N* | blaTEM-1, blaTEM-135, marR_S3N* | gyrA_S83L*, parC_S57T*, parE_I355T*, qnrB19, qnrB4, qnrS13, marR_S3N* | marR_S3N* | marR_S3N* |