Fig. 2: Transposable element superfamilies in the P. pachyrhizi genomes, K8108, MT2006 and UFV02. | Nature Communications

Fig. 2: Transposable element superfamilies in the P. pachyrhizi genomes, K8108, MT2006 and UFV02.

From: Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

Fig. 2

a Genome coverage of different TE superfamilies in three P. pachyrhizi genomes. b TE superfamilies are categorized based on the consensus identity, (1) conserved TEs, copies with more than 95% identity (2) intermediate TEs, copies with 85 to 95% identity and (3) divergent TEs, copies with less than 85% identity. Violin plots indicate: vertical line represents distribution at Q1-1.5 × IQR and Q3 + 1.5 × IQR, dots represent independent data points, first quartile (lower bar), median (thick line), third quartile (upper bar), and the shape indicates the frequency. (n= one independent biological sample). c The number of LTR retrotransposons in UFV02 based on the insertion age (Million years ago, Mya) with 1.0 million year intervals (left). The legume speciation event around 53 Mya showed in blue triangle and ~13 Mya whole genome duplication event in Glycine spp. marked with pink triangle23. In the right, the three plot shows recent burst of TEs between 0-20 Mya in three genomes of MT2006, K8108 and UFV02, respectively (n= one independent biological sample). Source data are provided as a Source Data file.

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