Table 1 Distribution of antimicrobial resistance (AMR) genes across the chromosome and different types of plasmids found in representative super-lineage A S. Concord genomes
Lineage | Lab ID | Location | Size (bp) | AMR genes | Insertion sequences or transposons in AMR cassettes |
|---|---|---|---|---|---|
3 | 95907 | Chromosome | 14495 | sul2, aph(3”)-Ib, aph(6)-Id | IS26, IS5075, ISStma11 |
IncHI2 plasmid | 288445 | catA2, dfrA19, sul1, sul2, blaCTX-M-15, blaSHV-12, qnrA1 | IS1353, IS26, Tn2, ISEc63, IS1247, IS6100, ISPa38, IS5075, IS903 | ||
3 | 64206 | Chromosome | 13168 | sul2, aph(3”)-Ib, aph(6)-Id | IS26, ISStma11 |
IncHI2 plasmid | 372354 | catA2, dfrA19, sul1, sul2, blaCTX-M-15 | IS26, Tn2, ISEc63, IS1247, IS6100, ISPa38, IS5075 | ||
4 | 1035531 | Chromosome | 91371 | blaSCO-1, blaOXA-10, dfrA23, catA2, cmlA5, sul1, sul2, blaCTX-M-15 | IS1353, IS26, IS4321R, ISCfr1, ISPa40, ISPmi2, ISStma11, TnAs1 |
IncI1α plasmid | 85904 | blaTEM-1 | Tn3, Tn2 | ||
4 | 254833 | Chromosome | 55792 | blaOXA-10, dfrA23, catA2, cmlA5, sul1, sul2 | IS1353, IS26, IS4321R, ISCfr1, ISPa40, ISStma11, TnAs2 |
IncA/C2 plasmid | 71024 | dfrA7, sul1, blaCTX-M-15 | IS26, ISEcp1 | ||
IncI1α plasmid | 85904 | blaTEM-1 | Tn3, Tn2 | ||
5 | 0508H45184 | IncHI2/IncA/C2 hybrid plasmid | 415479 | dfrA12, sul1, sul2, floR, blaTEM-1, catA2, blaCTX-M-15, mph(A) | Tn2, ISEc63, IS26, ISEcp1, IS103, ISKpn8, ISEsa1, ISEsa2, IS1D, IS1R, ISBcen27, ISKpn21, IS903, ISVvu2, Tn3 |
5 | 70366 | Chromosomally integrated IncHI2 plasmid | 270994 | dfrA19, sul2, catA2, blaTEM-1, blaSHV-12, qnrB2 | IS103, IS26, IS4321R, IS903, ISBcen27, ISEc63, ISEsa1, ISEsa2, ISKpn21, ISKpn8, Tn2 |
IncA/C2 plasmid | 160357 | floR, blaTEM-1, sul1, sul2, mph(A), blaCTX-M-15 | IS26, IS1247, IS6100, ISEcp1, Tn2 | ||
8 | 850890 | IncHI2 plasmid | 294257 | blaTEM-1, dfrA14, sul2, catA1, blaOXA-1, blaCTX-M-15, qnrB1, aac(6’)-Ib-cr5 | IS26, IS1×2, IS6100, IS3000, ISKpn11, Tn2, ISPa38, IS5075, ISEcp1, IS1R, IS1D |
