Fig. 7: Regulation of Epi-ATE-G isoform candidates under various stress conditions. | Nature Communications

Fig. 7: Regulation of Epi-ATE-G isoform candidates under various stress conditions.

From: Long-read direct RNA sequencing reveals epigenetic regulation of chimeric gene-transposon transcripts in Arabidopsis thaliana

Fig. 7

Heatmaps showing statistically significant differential isoform usage (dIF; left) and differential expression fold-change (right) with TE-ATTS under stress conditions or in epigenetic mutants. Transcriptome data with the stress treatment studies are from the public RNA-seq data. The Epi-ATE-G isoform candidate AT1G58848 found by others was also added32. Red dotted lines highlight predicted isoform switching at GER5 (AT5G13200) and F-box gene (AT1G11270) loci in Col-0 under heat stress conditions. The names of the transcripts from the consensus DRS transcriptome as well as one corresponding to the reference transcript are indicated (more than one reference transcript from DRS-AtRTD3 or mutant-DRS are applicable to some transcripts). Source data are provided as a Source Data file.

Back to article page