Fig. 5: Imputation accuracy, r2, as a function of minor allele frequency (MAF) for three genomes sequenced with a 1240k capture. | Nature Communications

Fig. 5: Imputation accuracy, r2, as a function of minor allele frequency (MAF) for three genomes sequenced with a 1240k capture.

From: Imputation of ancient human genomes

Fig. 5

From top to bottom: BOT2016, Stuttgart and I10871. We evaluated imputation accuracy at all variant sites in 1000 Genomes (first column), at the intersection of the 1240 K array and the 1000 Genomes panel (second column), and at the sites only found in 1000 Genomes (third column). The capture genomes were downsampled to coverages between 0.1x and 2.0x, as measured on the 1240 K sites.

Back to article page