Table 2 Comparison of the major genetic differences between the two lineages detected in this study and correspondence with previous nomenclatures

From: Genomic epidemiology of Vibrio cholerae during a mass vaccination campaign of displaced communities in Bangladesh

 

Clade 5

Clade 3

Major lineages

none

T11, T12, T13, LAT3

Minor lineages

Global 3.B, Asian lineage 1, Dhaka Clade B, Dhaka B5, Dhaka B6, PSC-1

Global 3.C, Asian lineage 2, Dhaka B1, Dhaka Clade A, PSC-2, Haitian variant

Serotype

Predominantly Inaba

Predominantly Ogawa

ctxB type

ctxB1

Predominantly ctxB7a

VSP-II type

VSP-II type 2,3,4

VSP-II type 1/C

ICE-SXT

SXT_ICETET/IDH_1986b and SXT_ICEGEN RND6867c

SXT_ICEGEN/RND6867

PLE1

PLE1d

none

  1. aSubclade 3.10 carries only ctxB1 and 3.12 carries predominantly ctxB1.
  2. bSubclades 5.18, 5.19, 5.20, 5.22.
  3. cSubclades 5.21, 5.22.
  4. dSubclades 5.19, 5.20, 5.23.