Table 2 Diagnostic features for the most abundant mass shifts detected in an open search of a pRBS-ID experiment
From: Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides
peak apex | ion type | mass | remainder propensity | delta mod. mass | percent PSMs (mod) | percent PSMs (unmod) | avg. intensity (mod) | avg. intensity (unmod) | intensity fold change |
|---|---|---|---|---|---|---|---|---|---|
226.0594 | diagnostic | 241.0626 | 37.76 | 26.3 | 17.55 | 8.35 | 3.02 | ||
226.0594 | diagnostic | 133.0500 | 27.28 | 15.1 | 7.89 | 4.44 | 3.21 | ||
226.0594 | b | 94.0344 | 26.86 | −132.025 | 29.96 | 0.8 | 46.16 | 36.40 | 47.49 |
226.0594 | b | 77.0092 | 15.15 | −149.050 | 15.96 | 1.4 | 24.54 | 17.53 | 15.96 |
226.0594 | y | 94.0362 | 14.48 | −132.023 | 27.53 | 0.9 | 43.49 | 32.78 | 40.58 |
57.0216 | b | 57.0216 | 46.25 | 0 | 22.07 | 1.7 | 52.66 | 12.89 | 53.05 |
57.0216 | y | 57.0216 | 23.03 | 0 | 20.16 | 1.6 | 53.24 | 13.47 | 49.82 |
94.0168 | diagnostic | 164.0832 | 25.70 | 10.0 | 10.86 | 5.20 | 5.37 | ||
94.0168 | diagnostic | 215.0582 | 32.53 | 15.3 | 12.71 | 6.64 | 4.07 | ||
94.0168 | diagnostic | 241.0626 | 44.98 | 26.3 | 15.37 | 8.35 | 3.15 | ||
94.0168 | b | 94.0168 | 32.01 | 0 | 37.35 | 0.9 | 46.32 | 42.79 | 44.93 |
94.0168 | b | −19.0638 | 19.08 | −113.081 | 16.47 | 0.4 | 36.95 | 18.82 | 80.82 |
94.0168 | b | 77.0042 | 18.13 | −17.0126 | 18.07 | 1.7 | 37.81 | 13.33 | 30.15 |
94.0168 | y | 94.0168 | 26.76 | 0 | 34.54 | 0.9 | 44.15 | 42.79 | 39.60 |
−48.0032 | diagnostic | 181.0986 | 27.63 | 16.3 | 9.95 | 4.63 | 3.64 | ||
−48.0032 | b | −48.0032 | 41.80 | 0 | 42.8 | 1.3 | 77.96 | 15.23 | 100.00 |
−48.0032 | y | −48.0032 | 24.37 | 0 | 41.25 | 1.3 | 64.48 | 20.08 | 100.00 |
