Fig. 8: Comparisons of seq2ripp pipeline and various RiPPs searching tools.
From: HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search
a A comparison of inputs and outputs for six benchmarked genome mining approaches for RiPP discovery. NLPPrecursor is a module of DeepRiPP. b A comparison of various tools for mining RiPPs from genomes. Metrics for ORF and Core detection are maximum normalized Levenshtein similarity to the correct core. For RiPPs, the metric was Tanimoto similarity between the true and predicted structures. Plots show the number of reference BGCs for which the tools' best predictions exceeded the metric cutoff.
