Table 1 Samples collected from Nigerian patients with symptoms of Lassa Fever (LF)

From: Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria

Number of Samples

LASV RT-qPCR

Hospital or Public Health Agency

State

Year

LASV Genomes

Non-LASV Genomes

415

Positive

Irrua Specialist Teaching Hospital

Edo

2017-18

220 reported in Siddle et al.14

37 reported in this study

95

Negative

Irrua Specialist Teaching Hospital

Edo

2018

2 reported in this study

11 reported in this study

25

Positive

Alex Ekwueme Federal University Teaching Hospital Abakaliki

Ebonyi

2019-20

10 reported in this study

0 reported in this study

13

Positive

Federal Medical Centre

Ondo

2019

3 reported in this study

0 reported in this study

5

Positive

Nigerian Centre for Disease Control

Kebbi

2019

2 reported in this study

0 reported in this study

  1. Amidst a 2017–2018 surge of LF in Nigeria, we generated 220 complete Lassa virus (LASV) genomes from the sequencing of 415 LASV-positive samples from the Irrua Specialist Teaching Hospital (ISTH) and reported the LASV genomes in Siddle et al.14. Here, we generate non-LASV genomes, as well as additional LASV genomes from 4 other cohorts.