Table 1 Comparison of DeepTMP with other state-of-the-art methods
From: Deep transfer learning for inter-chain contact predictions of transmembrane protein complexes
Method | Top 1 | Top 10 | Top 25 | Top 50 | Top L/10 | Top L/5 | Top L |
|---|---|---|---|---|---|---|---|
DeepTMP | 82.7 (76.9) | 82.3 (76.5) | 81.1 (74.8) | 79.4 (71.9) | 82.0 (75.3) | 80.1 (72.5) | 68.4 (62.3) |
CDPred | 55.8 (46.2) | 48.5 (49.6) | 48.4 (49.2) | 45.9 (46.5) | 48.6 (49.0) | 45.6 (44.8) | 33.8 (35.3) |
DeepHomo2.0 | 50.0 (46.2) | 48.7 (46.7) | 47.2 (44.9) | 43.3 (41.1) | 44.0 (42.0) | 41.1 (38.7) | 31.8 (27.2) |
GLINTER | 44.4 (40.0) | 38.0 (36.4) | 38.3 (36.6) | 34.3 (32.8) | 39.9 (36.0) | 36.4 (34.7) | 27.7 (27.4) |
DeepHomo | 28.8 (23.1) | 27.7 (23.3) | 24.8 (20.5) | 22.0 (19.2) | 23.2 (18.7) | 21.4 (18.4) | 15.7 (12.1) |
DNCON2_Inter | 13.7 (13.7) | 13.3 (13.1) | 12.0 (13.0) | 11.7 (13.0) | 12.5 (12.8) | 11.4 (12.7) | 7.9 (8.3) |
DeepHomo2_TMP | 63.5 (61.5) | 65.0 (63.3) | 63.0 (59.7) | 60.9 (56.2) | 60.6 (57.1) | 58.5 (55.9) | 45.9 (40.9) |
IT_Model | 59.6 (57.7) | 56.3 (55.8) | 54.8 (53.8) | 52.3 (51.0) | 53.9 (52.9) | 52.4 (50.9) | 42.0 (39.3) |
DT_Model | 51.9 (55.8) | 53.5 (53.3) | 53.4 (53.2) | 50.2 (49.0) | 50.4 (51.5) | 49.9 (47.9) | 38.5 (37.4) |
