Fig. 3: Performance evaluation.
From: epiAneufinder identifies copy number alterations from single-cell ATAC-seq data
a Pearson correlation between pseudo-bulk profiles for all the methods used to call CNAs in the SNU601 dataset. b Percent of genome which is unchanged upon downsampling. c Percent of normal calls, d loss calls, and e gain calls which are lost upon downsampling. The number of cells in each sub-sampling percentage are in Supplementary Table S6. The boxplots represent with the vertical line in the middle of the plot the median value and the triangle the mean value. Lower and upper boundaries represent the first and third quartile, respectively. Largest and smallest observed values are shown (whisker lines) and the asterisks denote the outliers.
