Fig. 5: Phylogenic analysis of divergent TRs.
From: A landscape of complex tandem repeats within individual human genomes
The left phylogenetic tree shows the evolution of complex tandem repeats in an intron of RFC1 at chr4:39,348,424-39,348,485 in the human reference genome (hg38). The right illustrates several tandem repeat patterns with different units represented by colored waves. The black box to the left of the tandem repeat indicates the nearest SNV at chr4: 39,348,321, which is common to the upper seven tandem repeat patterns. In the left tree, the first three numbers of each TR representative, for example (54, 210, 0.00) in the bottom, show the length of the TR representative, the number of TR alleles in the TR representative, and the discrepancy rate between the decomposition and TR representative.
