Table 1 Datasets used to generate Ground Truth datasets
From: DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas
Name | # sections x section thickness | Description | Dataset DOI | Publication |
|---|---|---|---|---|
GLT1a | 36 × 40 µm | Peroxidase-stained anti- glutamate transporter 1 (GLT1a) immunohistochemistry | 10.25493/Y147-2CE | Holmseth et al.60 |
PcP2 | 41 × 45 µm | X-gal treated Purkinje Cell Protein 2 (PCP2)-LacZ staining, fast red counterstain | 10.25493/A2EG-VPR | Lillehaug et al.58 |
CamKII | 47 × 25 µm | X-gal treated Calcium/calmodulin-dependent protein kinase (CamKII)-LacZ staining, Cresyl Violet counterstain | 10.25493/W97C-01R | Odeh et al.59 |
Calb1 | 58 × 25 µm | Calbindin1 in situ hybridization | n/a | |
β amyloid | 60 × 40 µm | DAB-stained anti- β amyloid immunohistochemistry | n/a | Yates et al.30 |
Myelin | 41 × 50 µm | Myelin stain, sample collection 2565 | 10.25493/Y147-2CE | Holmseth et al.60 |
Pitx3 | 32 × 45 µm | X-gal treated Paired Like Homeodomain 3 (Pitx3)-LacZ staining, fast red counterstain | 10.25493/DTB3-0KP | Lillehaug et al.58 |
