Table 1 Optimization of the Reaction Conditionsa
Entry | Endo F3 (D165A)-CPD | 3-azido-propylamine (mM) | InsP6 (μM) | Buffer | 5 h | 16 h | ||
---|---|---|---|---|---|---|---|---|
Ligation Yield (%) | Hydrolysis Yield (%) | Ligation Yield (%) | Hydrolysis Yield (%) | |||||
1 | 100 μM | 50 | 100 | PBS | 100 | 0 | 100 | 0 |
2 | 100 μM | 20 | 100 | PBS | 100 | 0 | 100 | 0 |
3 | 100 μM | 10 | 100 | PBS | 93 | 7 | 85 | 15 |
4 | 100 μM | 5 | 100 | PBS | 67 | 33 | 9 | 91 |
5 | 100 μM | 2 | 100 | PBS | 6 | 94 | 0 | 100 |
6 | 100 μM | 5 | 500 | PBS | 62 | 38 | 4 | 96 |
7 | 100 μM | 5 | 200 | PBS | 68 | 32 | 5 | 95 |
8 | 100 μM | 5 | 50 | PBS | 72 | 28 | 7 | 93 |
9 | 100 μM | 5 | 20 | PBS | 66 | 34 | 36 | 64 |
10 | 100 μM | 5 | 5 | PBS | 90 | 10 | 80 | 20 |
11 | 100 μM | 5 | 1 | PBS | 63 | 25 | 59 | 41 |
12 | 100 μM | 5 | 0.2 | PBS | 18 | 11 | 37 | 47 |
13 | 100 μM | 5 | 5 | PB pH 6.0 | 0 | 100 | 0 | 100 |
14 | 100 μM | 5 | 5 | PB pH 7.0 | 0 | 100 | 0 | 100 |
15 | 100 μM | 5 | 5 | PB pH 8.0 | 47 | 53 | 49 | 51 |
16 | 100 μM | 5 | 5 | PB pH 9.0 | 82 | 18 | 75 | 25 |
17 | 100 μM | 5 | 5 | PB | 43 | 57 | 39 | 61 |
18 | 100 μM | 5 | 5 | HEPES | 42 | 58 | 38 | 62 |
19 | 100 μM | 5 | 5 | Tris | 62 | 38 | 57 | 43 |
20 | 100 μM | 5 | 5 | MOPS | 45 | 55 | 40 | 60 |
21 | 100 μM | 5 | 5 | Tricine | 45 | 55 | 41 | 59 |
22 | 100 μM | 5 | 5 | NaOAc | 94 | 6 | 88 | 12 |
23 | 100 μM | 2 | 5 | NaOAc | 12 | 88 | 9 | 91 |