Fig. 1: The FBF-2 C-terminal tail binds to its RBD like LST-1 A and B. | Nature Communications

Fig. 1: The FBF-2 C-terminal tail binds to its RBD like LST-1 A and B.

From: Intra- and inter-molecular regulation by intrinsically-disordered regions governs PUF protein RNA binding

Fig. 1

Intrinsically disordered regions in a FBF-2 and b its partner protein LST-1. Schematic drawings of FBF-2 and LST-1 are shown with predicted disorder plot from IUPred2A70,71 above and protein constructs used below. The scores in the predicted disorder plot indicate the probability of the residue being disordered. The FBF-2 CT PIM (residues 607-613) is indicated by a yellow box. The FBF-2 CT sequence is shown with its PIM highlighted yellow. FBF-2 contains a structured RBD, and LST-1 contains a predicted zinc finger (ZnF). The N-terminal region of LST-1 is sufficient for GSC self-renewal, and the C-terminal region provides feedback to limit GSC number72. c Crystal structure of FBF-2 RBD + CT. A ribbon diagram of the FBF-2 RBD with cylindrical helices (red) is shown in complex with cFBE RNA (tan stick model) and its CT peptide (yellow). LST-1 A (blue) and LST-1 B (green) are superimposed. d Composite 2Fo-Fc omit map contoured at 1 σ is superimposed on the crystal structure of FBF-2 RBD + CT in complex with cFBE RNA. The CT is shown as a yellow stick model. e FBF-2 RBD interacts with L610 in its CT. The FBF-2 CT peptide (yellow stick model) is shown. FBF-2 RBD residues that interact with the CT are displayed as stick models. Side chains that form a hydrophobic pocket for L610 are shown with transparent spheres. Hydrogen bond interactions between the FBF-2 RBD and backbone atoms of its CT are indicated with dashed lines. f FBF-2 interacts with core sequences in its CT, LST-1 A, and LST-1 B. Crystal structures of FBF-2 RBD + CT, FBF-2 RBD in complex with LST-1 A and LST-1 B are superimposed. The LST-1 peptides are shown as stick models (LST-1 A, blue; LST-1 B, green). FBF-2 RBD residues that interact with the peptides are shown as in e. The critical leucine residues are indicated with an asterisk.

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