Fig. 6: Evolutionary history of LRV1 in Peru and Bolivia.
From: Diversity and dissemination of viruses in pathogenic protozoa
a Midpoint-rooted maximum likelihood phylogenetic tree based on 31 LRV1 genomes of L. braziliensis from Peru and Bolivia, one LRV1 genome (YA70) of L. braziliensis from French Guiana and 26 LRV1 genomes of L. guyanensis from Brazil, Suriname and French Guiana (the latter were omitted for visibility reasons). The position of the root is indicated with a dashed line. Clades are colored according to the different viral lineages (L1-L9). Branch values represent bootstrap support based on 100 replicates. The scale bar depicts the number of substitutions per site. Colored boxes at the tips of each branch represent the population structure of L. braziliensis (see legend), with colors matching the different groups of parasites as shown in Fig. 1. Note that the tetraploid hybrid parasites LC2318 and CUM68 from Peru and Bolivia, and isolate YA70 from French Guiana were omitted from the analyses of parasite population structure; these were thus not assigned to any parasite group. b Base map represents the ecological regions in Peru and Bolivia as per Köppen-Geiger climate classification115. Only four ecological regions were labeled for visibility reasons. The distribution is shown for the nine viral lineages L1-L9 (colored circles). Country-level data for Peru and Bolivia, including administrative boundaries, were available from: http://www.diva-gis.org/Data.
