Fig. 7: Phylogeographic reconstruction of LRV1.
From: Diversity and dissemination of viruses in pathogenic protozoa
a LRV1 sample size structured per lineage and per ecological region as per Köppen-Geiger classification. Af tropical rainforest. Am Tropical monsoon forest. Aw Tropical savannah. Cwb Temperate, dry winter, warm summer. b The summarized maximum clade credibility (MCC) tree (excluding PER010) from the posterior tree distribution. Lineages are collapsed for visibility purposes and are color coded according to the x-axis in (c). Branch support values represent posterior probabilities. The black scale bar represents the number of substitutions per site. c Distribution of the inferred diffusion coefficients of the whole LRV1 dataset (excluding PER010) and lineage-excluded partitions. The most right violin (gray) represents the diffusion coefficient distribution of the full LRV1 phylogeny. The other violins (colored per lineage) represent the change in the diffusion coefficient after removal of the specified lineage from the phylogeny. The solid and dashed red lines show the mean diffusion coefficient from the full LRV1 phylogeny and the standard deviation, respectively. Source data are provided as a Source Data file.
