Fig. 4: Nur77-GFP^HI and Nur77-GFP^LO CD4 T cells differ in expression of TCR clonotypes.

a Relative abundance of top 10 clonotypes from single-cell TCR-Sequencing of Nur77-GFP^LO and Nur77-GFP^HI CD4 T cells sorted from the lungs of one Nur77-GFP mouse at four weeks post-infection. Samples sorted on live CD3⁺CD4⁺CD44⁺ Nur77-GFP^LO or Nur77-GFP^HI cells. Amino acid sequences represent TCR CDR3 regions expressed as “TCRα_TCRβ“. b Feature plots show the localization of three expanded TCR clonotypes on gene expression UMAPs from Nur77-GFP^LO and Nur77-GFP^HI CD4 T cells. c Scatter plot shows the prevalence of TCR clonotypes among Nur77-GFP^LO vs. Nur77-GFP^HI cells. Blue dots indicate expanded clonotypes. Circle size indicates total abundance of each expanded clonotype.